rs217799797 SNP Detail

Summary

• ID
  rs217799797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48044910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC GCGCGAATCT GAGAAGCCTC
  R
  GGGCTGGGGT CCGCAGCTCC CCGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321109579	CHEV_4_48057782	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217799797					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48044910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14277	CpG island 14277	1101 bp distal
Cpgi14278	CpG island 14278	within coordinates
Gm57084	predicted gene, 57084	1697 bp upstream
Gm69235	predicted gene, 69235	682 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	243 bp upstream
Rr376438	regulatory region 376438	within coordinates
Rr591924	regulatory region 591924	1482 bp distal
Rr591925	regulatory region 591925	1935 bp distal
Rr591926	regulatory region 591926	1248 bp distal
Rr591927	regulatory region 591927	within coordinates
Rr591928	regulatory region 591928	254 bp proximal
Rr591929	regulatory region 591929	615 bp proximal
Tssr37180	transcription start site region 37180	1887 bp downstream
Tssr37181	transcription start site region 37181	1369 bp downstream
Tssr37182	transcription start site region 37182	1338 bp downstream
Tssr37183	transcription start site region 37183	1258 bp downstream
Tssr37184	transcription start site region 37184	1233 bp downstream
Tssr37185	transcription start site region 37185	1061 bp downstream
Tssr37186	transcription start site region 37186	1046 bp downstream
Tssr37187	transcription start site region 37187	205 bp upstream
Tssr37188	transcription start site region 37188	234 bp upstream
Tssr37189	transcription start site region 37189	265 bp upstream
Tssr37190	transcription start site region 37190	320 bp upstream
Tssr37191	transcription start site region 37191	347 bp upstream
Tssr37192	transcription start site region 37192	414 bp upstream
Tssr37193	transcription start site region 37193	470 bp upstream
Tssr37194	transcription start site region 37194	1060 bp upstream
Tssr41630	transcription start site region 41630	1670 bp upstream
Tssr41631	transcription start site region 41631	6 bp upstream
Tssr41632	transcription start site region 41632	41 bp downstream