rs217799867 SNP Detail

Summary

• ID
  rs217799867
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:84563228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCCCTCT CAGGAGTCTC
  ATCCACAGCC CAAAGCTTAA AACCTCAGGC TTCTAAACAA GAGGACAGGG TTTTTGATGA
  TTCTACAGTG AAGTCGACCA CTCCTGGTAA CCAGAGAATC TGGTCTGAGA TGCTGAGCGC
  CTTTCCACAT GCTCCACCCT CCCCCGTGCG AAGGCTTGAG CTGAGACCAG AGCAAGCCAT
  W
  ATGTATGAAA GAGGAGCAGA CCTCAGGGTC TGAGAGGACC CGGGGCGAGG CCATGTAATG
  GACCAAGACT GGTTTGTCAG AGGCTGAGAC CAGCTCAAAG AAAAGAACAC AGGTAGTGTT
  CCTGTCTCCA GATTTACTCT CCAGGAGGAA CGCAAAACAG TCCGGAGCAG AGAATTAGGG
  ATTGGAGGGT TGGGTACTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321595489	CHEV_5_84844394	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217799867					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:84563228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16022	CpG island 16022	727 bp proximal
Cpgi16023	CpG island 16023	1513 bp proximal
Epha5	Eph receptor A5	within coordinates
Gm42163	predicted gene, 42163	1369 bp upstream
Rr613965	regulatory region 613965	within coordinates
Rr613966	regulatory region 613966	1219 bp proximal
Rr613967	regulatory region 613967	1427 bp proximal
Tssr51507	transcription start site region 51507	1743 bp downstream
Tssr51508	transcription start site region 51508	1774 bp downstream
Tssr51509	transcription start site region 51509	1929 bp downstream
Tssr51510	transcription start site region 51510	1955 bp downstream
Tssr51511	transcription start site region 51511	1999 bp downstream