rs217800074 SNP Detail

Summary

• ID
  rs217800074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117430045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTGGTA AAGGTAGAAA
  GAATGTAACA CCCAAAATTT GCCACTTTGG CTTAACAATT ATTTTGTACT AAAAAGCCAG
  GCGGGGCTAC ATAGTAAGAT CTTGTGTCGA AAAGAAAGAA CAGAAATTCA AAAGTGGCAA
  GTATGGCGGA TTAGTGTGGC AGATTAGCCT GGCTCCTGGA CGGCCTGGCT CCGGCGTTTT
  R
  CAGTGCGAGC CCTTGAGAGG ATGTGAGTCT CGGGACACCG GCACCCTGCC TGCTGCCTTT
  GCATCCCGTC CTGTGCGGAC CACCATGGAC GTGCAGGCGC AGAGGCCACC TTTGTTGGAA
  GTGAAGAGGA ATGTAGAGCT GAAGACAAGC CTGGTCAAGT TCTCCTCCCG AGTGCCCCGT
  CAGCAAGCAG GCTCAAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323497992	CHEV_10_117031196	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217800074					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117430045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	within coordinates
Gm63651	predicted gene, 63651	586 bp upstream
Kifc5c-ps	kinesin family member C5C, pseudogene	213 bp upstream
Rr402265	regulatory region 402265	1681 bp upstream
Rr439564	regulatory region 439564	1544 bp proximal