rs217804087 SNP Detail

Summary

• ID
  rs217804087
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:134274353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGGCAT GCATCCTCAC
  ATCTGGTGGG TCGTGTCGTC GCCCCCCCCC CCCCGCCTCC CCCCCAGCAT CCTCCACTCC
  CTTTAAGTTG GAAGACTGTT TTGTTGCCAT TTGGGAGAAA GAAATAGGCA GGCTGGAGAC
  CTCAGCAGCC TTGGGAATGA AGGGTTGTAG ATAGGAAAGA AAATGGCTTG GGAGAGGTTG
  K
  GGGTGGGGGT GGGGGTGTCG GGGGGGGGGG CAGTTAGTCC AAACCTAGTT TGTAGTGCAG
  GGTGGTAGTG AGGTGCATAC CAGTAAAGTC GGAACTTGGG AGGATCAGAA GTTGAAGTTC
  ATCTTCTGCA GCATAATAAG TTTGAGGCCA GTCTGCGCTA CGTGGGAGCG TATCTCAAAA
  GGAAAAAAGC TGTATTTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss373262240	MGP_WTSI_7_141864307	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs217804087					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373262240	MGP_WTSI_7_141864307	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134274353 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19845	CpG island 19845			947 bp distal
Dock1	dedicator of cytokinesis 1			Intron
				Noncoding-Transcript-Variant
Rr656984	regulatory region 656984			1927 bp distal
Rr656985	regulatory region 656985			478 bp distal
Rr656986	regulatory region 656986			1355 bp proximal
Tssr69616	transcription start site region 69616			1963 bp downstream
Tssr69617	transcription start site region 69617			1909 bp downstream