rs217807226 SNP Detail

Summary

• ID
  rs217807226
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131567469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aatcatttt aaaattaaaa ataaattcta
  atataaactc ttatatatgt acattaatta tatataatat cttaattata tattatatac
  acatattata cattatatat tatatgtgca ctagtatata cattgtatat aatatacaat
  G
  tattctattt atttatatat aatatatttt tacattatat actctatata tatatatata
  tatatatata tatataagat ttatgttgtt tctttcaaga aacataagga aaaaatgtta
  gactcaaaac agaaaatgaa aaatctgtct                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319974774	CHEV_1_133536308	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217807226					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131567469 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr28482	regulatory region 28482	68 bp distal
Rr366988	regulatory region 366988	1334 bp downstream
Tssr8635	transcription start site region 8635	1435 bp downstream
Tssr8636	transcription start site region 8636	1393 bp downstream
Tssr8637	transcription start site region 8637	1368 bp downstream
Tssr8638	transcription start site region 8638	1327 bp downstream
Tssr8639	transcription start site region 8639	1247 bp downstream
Tssr8640	transcription start site region 8640	1235 bp downstream