rs217809375 SNP Detail

Summary

• ID
  rs217809375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138891585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGACTTCCT GGTTCGCGGA
  AGGTGGCGAA GCCGCCGCCG GCCGGGTCGC GGGAACCGAG AGGCGGGGGC AGGGGCAGGG
  GCGGGGGCGG CGTCGCCGCG GTGCTGTCCC CGCGAGGCCG CGGAGGGCGC CGTGGGCCAG
  CCGCCGCTCG GAGCAGCGCG TCCCGGACGG CGTGCGGGCG TGCGGGCGCG GGGCGACGGC
  R
  GCCCCGCAGC GACATGTGAC CATGGACCGC AGGACCAGGT GAGCGGCGGC GGGGCCAGGC
  CTCCGCGGCC CCGGGTGCGG CCTGCCCGGT ACGGCCCGCT GCGCGGAGGT CGGCGCTAGG
  CCGCAAAGCC TGCCCGGCCG GCGACCGGTC TTCCCCGGGC CGGGTCGGCC GTGCGCCGCG
  GCGGGCGGGC GGGCGGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351626555	MGP_WTSI_1_140860424	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217809375					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351626555	MGP_WTSI_1_140860424	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138891585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi831	CpG island 831	within coordinates
Dennd1b	DENN domain containing 1B	within coordinates
Gm37045	predicted gene, 37045	944 bp upstream
Rr28649	regulatory region 28649	within coordinates
Rr28650	regulatory region 28650	1015 bp proximal
Rr396345	regulatory region 396345	474 bp upstream
Tssr9165	transcription start site region 9165	375 bp downstream
Tssr9166	transcription start site region 9166	163 bp downstream
Tssr9167	transcription start site region 9167	39 bp downstream