rs217813216 SNP Detail

Summary

• ID
  rs217813216
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141264602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATACCCCC GGTCAGAGCA
  ACGGCCAACA GAATCAATGG CCCTCCATCA GAGAGAGAGA AAGGAAGGCG CTCACGCTTC
  CCAGGCCTCA CCAAAGAGGT TCTAGACCGG GCGACACAAC CCATTTTCCC AGGTTGACTC
  TAATGTGAGG ACGTTCCTTC TCCTAATTAT ATTCCCTGCA CCGACTGGAT AGTGGGAATT
  A
  AGAGTACGCC CAACTTGGAA CCTTCCAGGG TATTGGATAT CAGGAGAAGT GAATTTCCAC
  AGGCGATCGC AGATTTGCTA CGTTCTTTCT CAATGTGCGG AAAGTATGAA TAAATTCTCA
  TTGTAAGTGG GGTTGCATGC TGAGGCCTCT ACCAGTTACC CGGACACGCG TTTCTGGGAG
  CAAATAAGCG CTAAATGCTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387944	CHEV_4_141093206	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217813216					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141264602 () rs orientation: forward

Symbol	Name	Function Class
B830004H01Rik	RIKEN cDNA B830004H01 gene	1918 bp upstream
Cpgi15233	CpG island 15233	84 bp distal
Cpgi15234	CpG island 15234	128 bp proximal
Gm4123	predicted gene 4123	within coordinates
Gm68462	predicted gene, 68462	1799 bp downstream
Rr1207	regulatory region 1207	within coordinates
Rr603787	regulatory region 603787	1876 bp distal
Rr603788	regulatory region 603788	486 bp distal
Rr603789	regulatory region 603789	1148 bp proximal
Spen	spen family transcription repressor	within coordinates
Tssr44321	transcription start site region 44321	1143 bp downstream
Tssr44322	transcription start site region 44322	1271 bp downstream