GCGTCCAATC AGGAAGGGCT GCGACGTAAA ACTATGTCTT TGGGGAAAGT TAAGTCGTGC TCCAAGAGGT CTTTTTTCCT GCACTTAACT CAAAACGACC ACACAACCCC CTACCAGGCA AAGCTGCCCT GTTGCTCTAC CCACGCAGGG AAAAGACTAG AGGGATGGCT CGCAGCCGAG GGGCCCACGC GTCACTCAGC R GAACGGCGCG AAGCCCGTCC ATCTGCACCC ACAGCAAAAG CCTGCGGTGA ATGTGGGGCT GGCAAGACTC TCAAGGGCTG CGAGCCGTCA CCGGTCCCAC CCTGGCCTCC AAGCCCAGCC CCGCCGACCC CTGAGGGCGA GCGCGGATCT CAGGAGGCGG CGGGGGGACG AGCGGCCCGA GCGCCCTCTT TACCTGGTCG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss359780794 | MGP_WTSI_3_132754350 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs217814027 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss359780794 | MGP_WTSI_3_132754350 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr3:132797147 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13847 | CpG island 13847 | within coordinates | ||||||
Gstcd | glutathione S-transferase, C-terminal domain containing | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Ints12 | integrator complex subunit 12 | 469 bp upstream | ||||||
Rr398028 | regulatory region 398028 | 191 bp downstream | ||||||
Rr398029 | regulatory region 398029 | 371 bp upstream | ||||||
Rr398030 | regulatory region 398030 | 1640 bp upstream | ||||||
Rr585500 | regulatory region 585500 | within coordinates | ||||||
Rr585501 | regulatory region 585501 | 429 bp proximal | ||||||
Rr585502 | regulatory region 585502 | 465 bp proximal | ||||||
Rr585503 | regulatory region 585503 | 637 bp proximal | ||||||
Rr585504 | regulatory region 585504 | 1507 bp proximal | ||||||
Tssr31768 | transcription start site region 31768 | 441 bp upstream | ||||||
Tssr31769 | transcription start site region 31769 | 458 bp upstream | ||||||
Tssr31770 | transcription start site region 31770 | 500 bp upstream | ||||||
Tssr31771 | transcription start site region 31771 | 537 bp upstream | ||||||
Tssr31772 | transcription start site region 31772 | 1184 bp upstream | ||||||
Tssr35744 | transcription start site region 35744 | 350 bp downstream | ||||||
Tssr35745 | transcription start site region 35745 | 378 bp downstream | ||||||
Tssr35746 | transcription start site region 35746 | 412 bp downstream | ||||||
Tssr35747 | transcription start site region 35747 | 643 bp downstream | ||||||
Tssr35748 | transcription start site region 35748 | 659 bp downstream | ||||||
Tssr35749 | transcription start site region 35749 | 992 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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