rs217814540 SNP Detail

Summary

• ID
  rs217814540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78292896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATAAAGT TAATAAAATG
  GCTGGTGCCT GGGGCCCCAT CTGAGATCTG AGATTGTTCT CTGCCCCACC CCACCACCTT
  CACACAAGCG CGCGTGCGCA CGCACACACA CGCACACACA CACACACACA CACACACACA
  GGTTGGAAGT TCCAATATAC GACACGTGAC TCAGGAACCC TCACATACCA ACATGAATCG
  Y
  CCATACCATG TCATCTCTGC TCTCTGACTC CCAAACCAGA GCTGAGGAGG CAAAATTCCC
  AAGAATGATG TCAGTAAAGG GGCTACTGCT TCCTGAAAGG ATTGTCCCAC CTCAGTCTCC
  TTGCTCTCTG TGCACACACC CGCCCTCCTG TGTCCCAACT CTCACATCCA GCTGCATCAC
  AAACACTAGT AAAGAGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394653343	MGP_WTSI_15_78239126	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217814540					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394653343	MGP_WTSI_15_78239126	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78292896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7286	CpG island 7286	1751 bp distal
Cpgi7287	CpG island 7287	1176 bp proximal
Gm52185	predicted gene, 52185	1968 bp downstream
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Tssr131944	transcription start site region 131944	1964 bp downstream
Tssr131945	transcription start site region 131945	1900 bp downstream
Tssr131946	transcription start site region 131946	1017 bp upstream
Tssr131947	transcription start site region 131947	1043 bp upstream
Tssr131948	transcription start site region 131948	1064 bp upstream
Tssr131949	transcription start site region 131949	1214 bp upstream
Tssr131950	transcription start site region 131950	1258 bp upstream
Tssr131951	transcription start site region 131951	1583 bp upstream