rs217818233 SNP Detail

Summary

• ID
  rs217818233
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149151813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCATCTTC AGAGAGATTG TCTGGTTGGT
  TATAGATTCA TGTTCTCCTT TGAAAGCTGA GAAAGGCAGG AGAGGGTATG ATTCTAACTT
  TTACGAGCAA CAGCCACTTG GCAATTCCAC AGAAGATCTG GAGCGAAGCG GGGGGGATGT
  S
  TTTGAGTGAG TTAGTATGAA GCCTGCCTTG TCTCTGGCAA GAAGCAGCTG CAGAATGCCC
  AACCAGTCAC ACGATTAGGC TTCTCTATGG AAAATCGGTA AAACCAGCTG TTGAACCAAA
  CTGGTCACAG TTATGAGGAA GCTGGTGTTG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321019008	CHEV_3_149109140	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217818233					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149151813 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	675 bp upstream
Rr398127	regulatory region 398127	352 bp downstream
Rr587324	regulatory region 587324	1075 bp distal
Rr587325	regulatory region 587325	541 bp distal
Tssr36100	transcription start site region 36100	932 bp upstream
Tssr36101	transcription start site region 36101	911 bp upstream
Tssr36102	transcription start site region 36102	898 bp upstream
Tssr36103	transcription start site region 36103	807 bp upstream
Tssr36104	transcription start site region 36104	759 bp upstream
Tssr36105	transcription start site region 36105	681 bp upstream