rs217819071 SNP Detail

Summary

• ID
  rs217819071
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:72991081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTA TCTTTGTGAT CCCAGGTCAA
  M
  CAGAAAAGAC AGAATGAACT AATTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324097341	CHEV_12_74045294	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217819071					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:72991081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4744	CpG island 4744	1051 bp proximal
Gm26709	predicted gene, 26709	1500 bp upstream
Six6	sine oculis-related homeobox 6	within coordinates
Tssr113771	transcription start site region 113771	1325 bp upstream
Tssr113772	transcription start site region 113772	1371 bp upstream
Tssr113773	transcription start site region 113773	1383 bp upstream
Tssr113774	transcription start site region 113774	1393 bp upstream
Tssr113775	transcription start site region 113775	1456 bp upstream
Tssr113776	transcription start site region 113776	1480 bp upstream
Tssr116636	transcription start site region 116636	1136 bp downstream