rs217830293 SNP Detail

Summary

• ID
  rs217830293
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28590185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATTTAT TCTGTCATCC
  GATCCCCCAT TGCTCTGTAG CTCCACAGGC GTTCTGGGGT TTGCTTTGTG GCCCTGGGGA
  GGGAGAGCCG ACTGCAGATC AGGACCTCGG TGGATGGAAT CCGGGACCAG GACTCGCCCC
  AGCTGAGGCG CTCACCGATG ACGCATAGCT TGGCGTCCCA GCAACGCCGT TACTAAGGAG
  Y
  GGAGCGCTGT CGGAAACATG GATGCAACCA CAGCCCCTCA TCGCATTCCC CCGGAAATGC
  CTCAGTACGG GGAAGACTAC TACATTTTCG AGATGATGCA GGTGATCAGG CGCCCGAGGA
  TAGGGAATAC GGCTACCGGG CCGGGCCGGC AGCATGGTCT GGGGGGAAAT CCCTTTCCTC
  AGTTTCCCCA CCTGTGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353481825	MGP_WTSI_2_28555693	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217830293					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353481825	MGP_WTSI_2_28555693	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28590185 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	within coordinates
Cpgi11391	CpG island 11391	within coordinates
Gm75616	predicted gene, 75616	1324 bp downstream
Rr553884	regulatory region 553884	1304 bp distal
Rr553885	regulatory region 553885	533 bp distal
Rr553886	regulatory region 553886	789 bp distal
Rr553887	regulatory region 553887	within coordinates
Rr553888	regulatory region 553888	1408 bp proximal
Spaca9	sperm acrosome associated 9	522 bp upstream
Tssr16968	transcription start site region 16968	1310 bp downstream
Tssr16969	transcription start site region 16969	355 bp downstream
Tssr16970	transcription start site region 16970	19 bp downstream
Tssr16971	transcription start site region 16971	within coordinates
Tssr23291	transcription start site region 23291	514 bp upstream
Tssr23292	transcription start site region 23292	485 bp upstream
Tssr23293	transcription start site region 23293	434 bp upstream