rs217841965 SNP Detail

Summary

• ID
  rs217841965
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11890113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTGGTG TACCTCAGGG
  AGGGTCCCCA CAGAGCATTG CAGTTAGAAA GGGGACCATC TCCAGCAGCT CACTTCCCAG
  CCCTGACCTA CTTGGGATTC TTGCAACACC TGGAAAATAC TGAAACATAT GGCAGTTTCC
  AGCAAGGAGC AAAAGGAAGG TTGTCACTGT CACAGCCCCC TTCCAAGGGC ATGCTTGCAC
  W
  GTGATAAGCA GAAGGGGCCC ACTCTGAGGA TGGAGGCATA GGACTCACAG GGCCTTGTTC
  CTTCTCCTGT GGATAGAGGG GACCTTGTTT TGTTCATGGT TGCACCCTAG TAGTGTTTGC
  GAAAACACTC CCAGAAAACA AAAGTCACAT GGCGAAATTT AAATATATGA TCCTGCTCCC
  AAGCTCACCA CGCTTTCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494113	CHEV_8_11840113	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217841965					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11890113 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	1118 bp proximal
Tex29	testis expressed 29	375 bp upstream
Tssr76253	transcription start site region 76253	388 bp upstream
Tssr76254	transcription start site region 76254	401 bp upstream
Tssr76255	transcription start site region 76255	455 bp upstream