rs217844719 SNP Detail

Summary

• ID
  rs217844719
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152238636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGCGCC ATGCACGGTG
  TCCGCCTGAG CTCCCGGGTG AGCTCAAACT TCGTCGCTGT TCGCGGCATG CTCAGTTGAG
  TTTCCAACCA CTTCCGCCTA GCTGGTAAGG CCTCATTCCT CCAGAGGACC TGCGGTTACT
  GGGACCTGTA GTTTCTTTTC AGAGGTTTCC AGATTCCTCA CAGTGCCATA GCTTCGCTGC
  M
  GCTATGTACT TTTTGAACTA AGTACATTAG CATACCCCAA CAGGCAGGTG CCCCTTAAGA
  CCAACAAGTG TCAGGGAACC AAACTAAGAT GCTGGACCTG GCTTCTACTC CCCTGTAGCT
  TCTTTGACAG AAGTCTTGAA ATTCTTCCAC CCTACAAAGT TGGTGCCTTG ACCCTGGATA
  CTTTGCGTGT TTTTGTTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363706510	MGP_WTSI_4_151528288	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217844719					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363706510	MGP_WTSI_4_151528288	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152238636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15395	CpG island 15395	1625 bp distal
Cpgi15396	CpG island 15396	41 bp distal
Espn	espin	1808 bp upstream
Rr398896	regulatory region 398896	98 bp downstream
Rr605762	regulatory region 605762	1458 bp distal
Rr605763	regulatory region 605763	1338 bp distal
Rr605764	regulatory region 605764	within coordinates
Rr605765	regulatory region 605765	188 bp distal
Rr605766	regulatory region 605766	1007 bp proximal
Rr605767	regulatory region 605767	1319 bp proximal
Tssr44823	transcription start site region 44823	1782 bp upstream