rs217854786 SNP Detail

Summary

• ID
  rs217854786
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59701512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttgcaaatt ttatatgccc cagtacaggg
  gaacgccagg gccaagaagt gagagtgggt gggggggggg gggcggtata gggaactttc
  gggatagcat ttgaaatgta aataaagaaa acatctaata aataaataaa taaataaata
  W
  ataTAGCCAA GAACCTCTTT TAAGAAACAT TTTCAGAGGC ACATTTTAAC TTCTAAATAT
  GGCAAATTAA ATATGTGAAT CCAATATGAA AAAAAAAAaa aaaagcaagc tgagtaaacc
  atggagacaa agccagtaag cagctttcca                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319738948	CHEV_1_59719197	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217854786					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59701512 () rs orientation: forward

Symbol	Name	Function Class
Gm71026	predicted gene, 71026	815 bp downstream
Rr16806	regulatory region 16806	712 bp distal
Rr22466	regulatory region 22466	1889 bp proximal
Rr27302	regulatory region 27302	1105 bp distal
Rr371358	regulatory region 371358	1150 bp upstream
Sumo1	small ubiquitin-like modifier 1	within coordinates
Tssr11830	transcription start site region 11830	86 bp downstream