rs217858034 SNP Detail

Summary

• ID
  rs217858034
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19061608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAAGAC TGATAAAAAT
  TAAATGTATG ATATGGTTTC AATAGTAATT AATGGAAACA TACTTACTAT AAATTTTATA
  TAAGAATATT ATCTTTAACT TCCAGCTCTT TGGGAAGGTG ATGTTCAGAA AGGAATGTTC
  CTAAAATTGA GATAAGAAGC TATGCATTAT GCTAGAAGTT ATTGGAAATA TTGGGCAGGA
  A
  TGAGAAGAAT ATCATGACCA CTGGGGCTTG CTGAGGTATG CAATAACTTG AGAATATTTA
  AAGAAGCTGC CTTATATAGA TTCTCTTAAT AAAACACCTC TTCCCCAGGA TCAGGGAATA
  TGAACAAGAG CATGTAGAAT CATTGTAGGA GGCAGATGTG CTAGATGATG CCAAGAAAAT
  AGCATTTTCT AACCACAACA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss395552162	MGP_WTSI_16_19242951	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs217858034					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395552162	MGP_WTSI_16_19242951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19061608 () rs orientation: forward

Symbol	Name	Function Class
A530030E21Rik	RIKEN cDNA A530030E21 gene	667 bp upstream
Gm35545	predicted gene, 35545	1524 bp downstream
Gm56600	predicted gene, 56600	170 bp downstream
Iglv3	immunoglobulin lambda variable 3	1179 bp upstream
Rr512770	regulatory region 512770	816 bp distal
Tssr137404	transcription start site region 137404	1599 bp downstream
Tssr137405	transcription start site region 137405	1574 bp downstream
Tssr140323	transcription start site region 140323	1750 bp upstream
Tssr140324	transcription start site region 140324	1148 bp upstream
Tssr140325	transcription start site region 140325	1122 bp upstream
Tssr140326	transcription start site region 140326	1044 bp upstream