rs217877485 SNP Detail

Summary

• ID
  rs217877485
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134486093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTCGATA GAGCTTATTA
  AAGACTGGGG CTTTTCTCCC CTTCACTGAA AAATGTTTTG TATTTTTTAT ATTTAAAAAA
  ATTTTTTAAA TGTGTGTTGA GCTGAAGGGG TCTGCAACCC TATAGGTGGA ACAATATGAA
  CTAACCAGTA CCCCCAGAGC TCATGTCTCT AGCTGCATAT ATATCAGAAG ATGACCTAGT
  W
  GGCCATCATT GGGAAAAGAG GCCCCTTGGT CTTGCAAACT TTATATGCCC CAGTACAGGG
  GAATGCCAGG GCCAAGAAGT GGGAGTGGGT GGGTAGGGGA GCAGGGCGGG GGAGGGTATA
  GGGGACTTTT GGGATAGCAT TTGAAATGTA AATGAGGAAA ATAATAAAAA AATAAAAAAA
  ATGTGTGTGT TGCTTGTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss351521277	MGP_WTSI_1_136454932	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	A	A	T	T	T	A	A	T	A	T	A	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217877485					SNP	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	A	A	T	T	T	A	A	T	A	T	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351521277	MGP_WTSI_1_136454932	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134486093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	1295 bp distal
Cpgi773	CpG island 773	1531 bp proximal
Gm57134	predicted gene, 57134	1253 bp upstream
Kdm5b	lysine demethylase 5B	1823 bp upstream
Rr367005	regulatory region 367005	1095 bp downstream
Rr367006	regulatory region 367006	1686 bp upstream
Rr418945	regulatory region 418945	1264 bp distal
Rr418947	regulatory region 418947	1921 bp distal
Rr418948	regulatory region 418948	902 bp distal
Rr418949	regulatory region 418949	1333 bp proximal
Tssr8904	transcription start site region 8904	1802 bp upstream
Tssr8905	transcription start site region 8905	1835 bp upstream
Tssr8906	transcription start site region 8906	1859 bp upstream
Tssr13798	transcription start site region 13798	1353 bp upstream