rs217888769 SNP Detail

Summary

• ID
  rs217888769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79627216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT CTAAATCTTT AAGAGCCCCG
  Y
  AACATACAGA GAAGAAGCGT GTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324677534	CHEV_14_79789583	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217888769					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79627216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6774	CpG island 6774	317 bp proximal
Naa16	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	within coordinates
Rr404230	regulatory region 404230	870 bp upstream
Rr496090	regulatory region 496090	within coordinates
Rr496091	regulatory region 496091	927 bp proximal
Rr496092	regulatory region 496092	992 bp proximal
Rr496093	regulatory region 496093	1015 bp proximal
Tssr129900	transcription start site region 129900	355 bp upstream
Tssr129901	transcription start site region 129901	863 bp downstream
Tssr129902	transcription start site region 129902	890 bp downstream