rs217896463 SNP Detail

Summary

• ID
  rs217896463
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42773825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCAGCA CTGAAACTCT
  GGAAAATCTT TTCCATGGGT TCCAGTCTAT GGTGGAGAAC TCACCAGGTC CAAGAGCTAA
  GCCAGGGCCT TTGTGGTTAG CATGTCATTC TCTCCGGTAC CCTGAAAGAC ACTCTGTTAT
  CTGTCTCCTT TAATCATGAA GGGAGGGGCA AAAAATTAAT TGTCCTAAAT CCTTCTCTGT
  C
  TATAAGCTAT AGTTCCCTCC GCTTGAGGTG ACTGTCACCA CCTTCTGTCT TACTATGAGC
  TCCCAAGTCT GTACACAAGT TCAGGATGAA CTGAAAGCTG CCCGTTCATC TCACTGTGTA
  ACCAACTCAG CAGTCAGCTT GCCTTTTCTC ACCCGGGTGA ACAGCGCTAC CTTGAGTTCC
  ATCTCCTGGA TGTTCTGGGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322936127	CHEV_9_42670612	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217896463					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42773825 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	400 bp upstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates
Rr677285	regulatory region 677285	1955 bp distal
Rr677286	regulatory region 677286	1000 bp distal
Rr677287	regulatory region 677287	873 bp proximal