rs217896962 SNP Detail

Summary

• ID
  rs217896962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87614263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGTTAAA AGTAGCTTCG
  TATTCATATT GGTTTTTTTT TTTAATCGGC GTGTTTCTTT AAAATAAATT CAAAAGAAAG
  CAGAACTCTA GAATTGAACG ATCGCAAACA TGTATGTGCA GTTCTGTTGT TTAAACTCAA
  CATTTTCTTA GGATTAACAG GATGTGGGTT TGATGGGGAT AATAAAAAAA ATCACTTGTA
  R
  AATAAAATTC ACTATGTGCA CAAATCTTTA GTATAAAATA GGCCAGGGAC GATTCGTTTT
  GTTTCATTTT GCTTTGCCTC CTTTATTCGA TGTTCATTTA AACACTGCAG TCCTAGCTTT
  CTTCTGGCTT CTCCTCGGCA TTCAGGAAAA TGGCCTCTGA AAGTACCATC AACCCCGGAA
  GGAGGGTTTT GTTTTTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378383660	MGP_WTSI_9_87627045	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217896962					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378383660	MGP_WTSI_9_87627045	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87614263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	746 bp distal
D030062O11Rik	RIKEN cDNA D030062O11 gene	120 bp downstream
Gm69731	predicted gene, 69731	57 bp downstream
Rr684220	regulatory region 684220	460 bp distal
Rr684221	regulatory region 684221	776 bp distal
Rr684222	regulatory region 684222	57 bp proximal
Rr684223	regulatory region 684223	1158 bp proximal
Tbx18	T-box18	950 bp upstream
Tssr2959	transcription start site region 2959	966 bp upstream
Tssr90806	transcription start site region 90806	1053 bp upstream
Tssr90807	transcription start site region 90807	1038 bp upstream
Tssr90808	transcription start site region 90808	937 bp upstream
Tssr90809	transcription start site region 90809	925 bp upstream