rs217898946 SNP Detail

Summary

• ID
  rs217898946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107972142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGACGTAT AGCAGCAGAA
  TACAGAGCCG GTGTTCAGAG ACAGGGCAGG TCTGGGAGGA GTGAAGGAAG TAGGATTGGA
  CTCCAGCCGA CTGTGAGCTG AAAGCTGCGG GATCAGAGAG AAAGCCCTGA GCGTTCGAAG
  GGTGGGGCTT CGGAGGAACA CTAATGATCC TTAAGGATGA GGGGGCGGGG GCGGGGGCGG
  R
  GACGGGTGGG AACCGAATAC AGAGACTAGC GGGTCTGTGA AAGCGGAATG TTGCGGGGCG
  CCTCAGTCGC AGGGATCTCT TTCAGCGCTC TCCCCATCTA CTGCAAGCCA GGCGATTAGG
  AGTGGGAAAC TTAGGTTCCC GGGTGGAGCC CTGGGGCGCC GGGCAAAGGG CGGTGCTGAA
  CTCTCTGGGT GCTACCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378860069	MGP_WTSI_9_107997274	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217898946					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378860069	MGP_WTSI_9_107997274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107972142 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	406 bp upstream
Bsn	bassoon	1079 bp downstream
Cpgi22322	CpG island 22322	within coordinates
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	221 bp downstream
Rr686707	regulatory region 686707	647 bp distal
Rr686708	regulatory region 686708	350 bp distal
Rr686709	regulatory region 686709	within coordinates
Rr686710	regulatory region 686710	813 bp proximal
Rr686711	regulatory region 686711	1337 bp proximal
Rr686712	regulatory region 686712	1559 bp proximal
Tssr87065	transcription start site region 87065	247 bp downstream
Tssr87066	transcription start site region 87066	249 bp upstream
Tssr87067	transcription start site region 87067	294 bp upstream
Tssr91491	transcription start site region 91491	456 bp upstream
Tssr91492	transcription start site region 91492	401 bp upstream