rs217900876 SNP Detail

Summary

• ID
  rs217900876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72025911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACAAAGC CCCAGGTAAG
  TTAACCAATG ACCATGCAGA GGGTTCTTCC TGCTGAGATT GGAAGGGATG GGAGTCTGTG
  TCCATTCAGC TCCTCCTATA TTCTTCCAAC TAGTGCACAC ATTCCTTTCT AGTCCCTGTC
  GGGATTGCTA TGGCTCAGAG CCTCCCTCAG TATCTTTTCA TATAGAATAA ACCCCTTAGC
  R
  TGTTACTGAC CAATGGATCC CATATTTGAA GCGTGTGTAA CAATGCTTTG TCACTGTCTT
  TCTCTATAGA CCTGGCCAGA GGACTGTGGA TGACCTAGAG ATTATCTACG ACGAGCTCCT
  TCATATTAAA GCCTTATCCC ATCTCTCTAC CACAGTGAGT ATCTCTTAAT CAAGCTGTGG
  TGCACAGGCA TCCACTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320341698	CHEV_2_72033624	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217900876					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72025911 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75163	predicted gene, 75163			1329 bp downstream
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4			Intron
				Noncoding-Transcript-Variant
Rr558927	regulatory region 558927			676 bp proximal
Rr558928	regulatory region 558928			1469 bp proximal
Rr558929	regulatory region 558929			1644 bp proximal