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rs217900885 SNP Detail
Summary
  • ID
    rs217900885
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44127070 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCCTTTCTC CATCTTCCCT
TGCTCCCTAT TTTTTCTATC CTTCCATTTT CTTCCTTCAT CTCTTCCATC TTTTCTTCCT
CTATCTTTCT TCTCCTCCCC TTCTATTTTT TCTCTTCTAT TTTCTCCTCA TCATCGTCCT
ATTTCATTTC CTCTTCCTCA TCCTTCATAC CTTCCTCCTG TATCTCCTGT TCATCCTTCT
R
CATTTCCTCT TCGTATCTAT TTCCTCCTCC TCCTCAATCT CCTACCTATA CTTCATCTCC
TCTTTCTCTA TCTCCTCCTA CTCTTCTACA TCCCTTTACT TCTCCATCTC CTCCTCTGTT
TTCTTCTCCA TCTGCTCTCC CTTTTCTTTC CATCCATATC ATTCCTTATC TATCTCTCTT
CTCTGCTGTT TCCTCTGCCA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156088 MGP_WTSI_7_51733016 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217900885 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156088 MGP_WTSI_7_51733016 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127070 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646102 regulatory region 646102 1987 bp distal
Tssr2222 transcription start site region 2222 1292 bp downstream
Tssr2223 transcription start site region 2223 1113 bp downstream
Tssr2224 transcription start site region 2224 267 bp downstream
Tssr2225 transcription start site region 2225 227 bp downstream
Tssr2226 transcription start site region 2226 292 bp upstream
Tssr2227 transcription start site region 2227 1365 bp upstream
Tssr66194 transcription start site region 66194 1943 bp downstream
Tssr66195 transcription start site region 66195 1892 bp downstream
Tssr66196 transcription start site region 66196 1859 bp downstream
Tssr66197 transcription start site region 66197 1714 bp downstream
Tssr66198 transcription start site region 66198 1683 bp downstream
Tssr66199 transcription start site region 66199 1673 bp downstream
Tssr66200 transcription start site region 66200 1650 bp downstream
Tssr66201 transcription start site region 66201 1632 bp downstream
Tssr66202 transcription start site region 66202 1617 bp downstream
Tssr66203 transcription start site region 66203 1595 bp downstream
Tssr66204 transcription start site region 66204 1539 bp downstream
Tssr66205 transcription start site region 66205 1515 bp downstream
Tssr66206 transcription start site region 66206 1502 bp downstream
Tssr66207 transcription start site region 66207 1482 bp downstream
Tssr66208 transcription start site region 66208 1468 bp downstream
Tssr66209 transcription start site region 66209 1437 bp downstream
Tssr66210 transcription start site region 66210 1404 bp downstream
Tssr66211 transcription start site region 66211 1364 bp downstream
Tssr66212 transcription start site region 66212 1321 bp downstream
Tssr66213 transcription start site region 66213 1306 bp downstream
Tssr66214 transcription start site region 66214 1274 bp downstream
Tssr66215 transcription start site region 66215 1244 bp downstream
Tssr66216 transcription start site region 66216 1197 bp downstream
Tssr66217 transcription start site region 66217 1125 bp downstream
Tssr66218 transcription start site region 66218 1071 bp downstream
Tssr66219 transcription start site region 66219 1029 bp downstream
Tssr66220 transcription start site region 66220 995 bp downstream
Tssr66221 transcription start site region 66221 976 bp downstream
Tssr66222 transcription start site region 66222 923 bp downstream
Tssr66223 transcription start site region 66223 856 bp downstream
Tssr66224 transcription start site region 66224 833 bp downstream
Tssr66225 transcription start site region 66225 813 bp downstream
Tssr66226 transcription start site region 66226 800 bp downstream
Tssr66227 transcription start site region 66227 759 bp downstream
Tssr66228 transcription start site region 66228 756 bp downstream
Tssr66229 transcription start site region 66229 743 bp downstream
Tssr66230 transcription start site region 66230 723 bp downstream
Tssr66231 transcription start site region 66231 688 bp downstream
Tssr66232 transcription start site region 66232 676 bp downstream
Tssr66233 transcription start site region 66233 654 bp downstream
Tssr66234 transcription start site region 66234 624 bp downstream
Tssr66235 transcription start site region 66235 604 bp downstream
Tssr66236 transcription start site region 66236 577 bp downstream
Tssr66237 transcription start site region 66237 556 bp downstream
Tssr66238 transcription start site region 66238 537 bp downstream
Tssr66239 transcription start site region 66239 486 bp downstream
Tssr66240 transcription start site region 66240 405 bp downstream
Tssr66241 transcription start site region 66241 393 bp downstream
Tssr66242 transcription start site region 66242 313 bp downstream
Tssr66243 transcription start site region 66243 299 bp downstream
Tssr66244 transcription start site region 66244 248 bp downstream
Tssr66245 transcription start site region 66245 186 bp downstream
Tssr66246 transcription start site region 66246 158 bp downstream
Tssr66247 transcription start site region 66247 111 bp downstream
Tssr66248 transcription start site region 66248 70 bp downstream
Tssr66249 transcription start site region 66249 47 bp downstream
Tssr66250 transcription start site region 66250 28 bp downstream
Tssr66251 transcription start site region 66251 3 bp downstream
Tssr66252 transcription start site region 66252 7 bp upstream
Tssr66253 transcription start site region 66253 30 bp upstream
Tssr66254 transcription start site region 66254 60 bp upstream
Tssr66255 transcription start site region 66255 120 bp upstream
Tssr66256 transcription start site region 66256 148 bp upstream
Tssr66257 transcription start site region 66257 184 bp upstream
Tssr66258 transcription start site region 66258 214 bp upstream
Tssr66259 transcription start site region 66259 243 bp upstream
Tssr66260 transcription start site region 66260 359 bp upstream
Tssr66261 transcription start site region 66261 385 bp upstream
Tssr66262 transcription start site region 66262 402 bp upstream
Tssr66263 transcription start site region 66263 408 bp upstream
Tssr66264 transcription start site region 66264 418 bp upstream
Tssr66265 transcription start site region 66265 447 bp upstream
Tssr66266 transcription start site region 66266 490 bp upstream
Tssr66267 transcription start site region 66267 518 bp upstream
Tssr66268 transcription start site region 66268 547 bp upstream
Tssr66269 transcription start site region 66269 567 bp upstream
Tssr66270 transcription start site region 66270 618 bp upstream
Tssr66271 transcription start site region 66271 636 bp upstream
Tssr66272 transcription start site region 66272 702 bp upstream
Tssr66273 transcription start site region 66273 714 bp upstream
Tssr66274 transcription start site region 66274 729 bp upstream
Tssr66275 transcription start site region 66275 737 bp upstream
Tssr66276 transcription start site region 66276 766 bp upstream
Tssr66277 transcription start site region 66277 774 bp upstream
Tssr66278 transcription start site region 66278 806 bp upstream
Tssr66279 transcription start site region 66279 853 bp upstream
Tssr66280 transcription start site region 66280 892 bp upstream
Tssr66281 transcription start site region 66281 923 bp upstream
Tssr66282 transcription start site region 66282 949 bp upstream
Tssr66283 transcription start site region 66283 963 bp upstream
Tssr66284 transcription start site region 66284 980 bp upstream
Tssr66285 transcription start site region 66285 995 bp upstream
Tssr66286 transcription start site region 66286 1032 bp upstream
Tssr66287 transcription start site region 66287 1050 bp upstream
Tssr66288 transcription start site region 66288 1086 bp upstream
Tssr66289 transcription start site region 66289 1134 bp upstream
Tssr66290 transcription start site region 66290 1195 bp upstream
Tssr66291 transcription start site region 66291 1224 bp upstream
Tssr66292 transcription start site region 66292 1262 bp upstream
Tssr66293 transcription start site region 66293 1280 bp upstream
Tssr66294 transcription start site region 66294 1301 bp upstream
Tssr66295 transcription start site region 66295 1586 bp upstream
Tssr66296 transcription start site region 66296 1719 bp upstream
Tssr66297 transcription start site region 66297 1762 bp upstream
Tssr66298 transcription start site region 66298 1787 bp upstream
Tssr66299 transcription start site region 66299 1856 bp upstream
Tssr66300 transcription start site region 66300 1863 bp upstream
Tssr66301 transcription start site region 66301 1887 bp upstream
Tssr66302 transcription start site region 66302 1901 bp upstream
Tssr66303 transcription start site region 66303 1942 bp upstream
Tssr66304 transcription start site region 66304 1950 bp upstream
Tssr66305 transcription start site region 66305 1960 bp upstream
Tssr66306 transcription start site region 66306 1994 bp upstream
Tssr72198 transcription start site region 72198 1862 bp upstream
Tssr72199 transcription start site region 72199 163 bp upstream
Tssr72200 transcription start site region 72200 783 bp downstream
Tssr72201 transcription start site region 72201 1284 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory