rs217912562 SNP Detail

Summary

• ID
  rs217912562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTCTC ACGCCTCTAA
  TTTTTCATTG GACAGCAGTG GCCAATTTCA GATTCACTTT AGACTCTGGC TGACCTGCTG
  GGAGAGCAGG TGTGAGGCCA CTGGGTTCCC AGAGCATCCT AGTAGGAAGT CTAGGAGCCC
  CAGCCTAGAC CAGACCAGGT CTATCCAAGA CAACCAGCGA ATGCCCTCTC TCCAGCCCTG
  Y
  GTCCTGGTCC ATCATGACCT GAGTATGTGT TTGAGTATGA GCGTCTTTTG TGACCATCAG
  TGACTGAGAG TGTCTGCTGC AGGGTGGGTA CAGATACAGA CAGCACTGAG CGCACGGGTA
  GATGTTTCTA CACGCGGGAC TGCCAATGAC TGTCCATCCC AGCAGCTGCA CTCCACTTCC
  TTCTGCCGGT TGGTCTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417489	CHEV_13_70981463	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217912562					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990704 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	774 bp upstream
Cpgi5821	CpG island 5821	745 bp distal
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	869 bp upstream
Tssr123159	transcription start site region 123159	831 bp upstream
Tssr123160	transcription start site region 123160	802 bp upstream
Tssr123161	transcription start site region 123161	775 bp upstream