rs217920857 SNP Detail

Summary

• ID
  rs217920857
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51360925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTGCCCC TCCATCTGGA
  AGAGTTTGAC TCTGTGATTG CTCCTTCTTG CCTTCCTTAT GACTGTGTGA ACCTTCTCTC
  CAGCCTCTTT TCTGGATGTT TGTTATCTGT CTGTTGCTTA GCATCAGATG CCTAATGTCT
  CAGAAAGGAC ACATGAGTCA ATGAGCCCTA ACACCACCAC AACCAACACC ACCACCATCA
  S
  CACCACTCCC CAATCCACCT GTACTCATTC ACCCTGTTAT CCACAGATAA TTTCTTTTGT
  ATAAGTTTGA GGATGATTTT ATTAGGGTTT AAAGAAAAAT GTAGCACAGG CAATCCGTTA
  ATCTTAGCAG CTGCCAGGTG GAGAAAGAGA AAAGGAAGAA ACAAAATTAG GGGGAAATCA
  CATTGTTTGA GTAGAGCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380379665	MGP_WTSI_10_51204635	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217920857					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379665	MGP_WTSI_10_51204635	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51360925 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Tssr93244	transcription start site region 93244	1945 bp downstream
Tssr93245	transcription start site region 93245	1409 bp downstream
Tssr93246	transcription start site region 93246	1224 bp downstream
Tssr93247	transcription start site region 93247	1181 bp downstream
Tssr93248	transcription start site region 93248	1140 bp downstream
Tssr93249	transcription start site region 93249	974 bp downstream
Tssr93250	transcription start site region 93250	513 bp downstream
Tssr93251	transcription start site region 93251	452 bp downstream
Tssr93252	transcription start site region 93252	357 bp downstream
Tssr93253	transcription start site region 93253	161 bp downstream
Tssr93254	transcription start site region 93254	28 bp downstream
Tssr93255	transcription start site region 93255	171 bp upstream
Tssr93256	transcription start site region 93256	283 bp upstream
Tssr93257	transcription start site region 93257	646 bp upstream
Tssr93258	transcription start site region 93258	881 bp upstream
Tssr93259	transcription start site region 93259	923 bp upstream
Tssr97554	transcription start site region 97554	920 bp downstream
Tssr97555	transcription start site region 97555	1482 bp downstream