rs217928673 SNP Detail

Summary

• ID
  rs217928673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81910522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAATTGA ACTCAGGACC
  TCTGGAAGAG CAGTAAGTGC TCTTAACCAC TGCACCATCT CTCCAGCTGC CAGGTGTTAG
  TTATCGTCAT TAAAATTATA TTATCATTCA GCTAATAAGC TGGCTCTCTA GGTAAAGGTG
  CATGCTGCCA AGCCTGACGG CCTGAGTTCT CCTCCTGGGA CCCCTGTAGT GGAGGGAAAG
  R
  GCCAACTTCT CAAGCTGCCC TCTGCCCTCC CACACCCGCG CTGTGGATGT GCACCCTCCC
  CCCAGATAAA TAAGTGCTTT TGTTTTTCCA GACAGGGTTT CTCTGTGTAG CTCCGGGTGT
  CCTGGAACTT GCTCTGTAGA ACAGGCTGGC CCTGAAATCA GACCTGCCTC TGCCTCCACC
  CAAGTGCTGG GATTAAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033180	CHEV_15_81856751	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217928673					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81910522 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	1321 bp proximal
Tssr132336	transcription start site region 132336	1704 bp upstream
Tssr132337	transcription start site region 132337	1733 bp upstream
Tssr132338	transcription start site region 132338	1768 bp upstream
Tssr132339	transcription start site region 132339	1790 bp upstream
Tssr135523	transcription start site region 135523	1528 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates