rs217933851 SNP Detail

Summary

• ID
  rs217933851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62723805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCATAAT CACTTTATAG
  GAAATGGAAA TACAGTAAGA GAGAAATTCC TGCCATGAGG TTCAGGCTTG ACTTTAACTA
  GGCATATCCC AAGGTAAGAT AGCTTTCTCT TCTTCCAGAA GTCTGCCCTT AGACAAGGAA
  ATCTACTGCT TCAGGTGGAA GGGAGAAAAC TGGCTTGTGG CTTTACACTC CACTCCCCCA
  R
  TTCCATACCT GAACTGTGGT ATATAAATGT CCCTCGATAG CCTAGCAGAT GCCTTTAATC
  CCAGGACTTG GGGGGCAGAG GCAAGTGGAT TTCTGAATTA TAGGCCAGTC TGGTTTACAA
  AGTGAGTTCT AGGACAGCCA GGGCTATACA GAGAAATCCT GTCTCAAAAA AACAAAACAA
  AATAAAACAA ATAAATGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323332087	CHEV_10_62350774	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217933851					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62723805 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	468 bp distal
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	24 bp downstream
Tet1	tet methylcytosine dioxygenase 1	563 bp upstream
Tssr97890	transcription start site region 97890	586 bp upstream
Tssr97891	transcription start site region 97891	553 bp upstream