rs217949813 SNP Detail

Summary

• ID
  rs217949813
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101275783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGTTAA AAAAAAAAAG
  GCAGTGGCAA AAGCATGGTG AGTTCAAGAC CATCCTGGGC TGTGAAGAGA AGCCCTGTCT
  CAAACAAATC AAAGCAAAGG CTGAGGCATG TGGGAGTATT GGTTGGTATG TGAGGGGCAA
  GGAAAAGAAA GCCGCCGTTT GAGGTGGTGA GCAGAGTCGA GAGTATTATA TCCTTGGCAA
  M
  GAAGCCCTGG GATCCTCTGT CCTTCTCTCT CTTCCTCGGA GTACAGCCAA AGTCATCCTT
  CTCTTCCTCC TCTTCAGGGC GCTGGCATTG GATGGAGCCA GTCAAGGTTT TAAAACTTTG
  GCTGCAACTA TGGGGCCAGG ATTCGATCAT TTGTTGTTGT TGTATATCAA GCAAAAAGAA
  GAGCGTTGGG TATACAATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362614044	MGP_WTSI_4_101091191	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217949813					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362614044	MGP_WTSI_4_101091191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101275783 () rs orientation: forward

Symbol	Name	Function Class
Ak4	adenylate kinase 4	691 bp upstream
Cpgi14500	CpG island 14500	473 bp proximal
Gm69573	predicted gene, 69573	186 bp downstream
Rr596144	regulatory region 596144	1442 bp distal
Rr596145	regulatory region 596145	218 bp proximal
Rr596146	regulatory region 596146	730 bp proximal
Rr596147	regulatory region 596147	1901 bp proximal
Tssr37989	transcription start site region 37989	715 bp upstream
Tssr37990	transcription start site region 37990	749 bp upstream
Tssr37991	transcription start site region 37991	773 bp upstream
Tssr37992	transcription start site region 37992	1110 bp upstream
Tssr37993	transcription start site region 37993	1567 bp upstream