rs217950803 SNP Detail

Summary

• ID
  rs217950803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAGATA CTGGCAGAGG
  AAGAAAGTCA TGCATTCATT TGTTTCAAGT CCCATGATCA ACCCCCTCAG CCCTGGGTTG
  TTGGTTTTTT TTTCTTCTGG CTGCTCACCA GACCACCTCG CCCACATTGG AGGAGATGAG
  GTAGCGGATG AACTGCTTCA TGTTGTTGTA GATGGCGCGG CCTTCCTCCA CGGCAGCCAC
  R
  ATGGTGGAGA AGTTATCATC GGCCAGTACC ATTTCAGAGG CCGTCTTAGC CACAGCAGTA
  CCAGATCCCA TGGCAATGCC AATCTCGGCC TTCTTCAGAG CAGGGGCATC ATTGACACCA
  TCCCCTGTCT GAAGACGGAA GGAGAGAGTG AGAAACTCCA GGTTCCAGAT GCCTTCTATT
  TCCCCTCCTC AGACTCCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068764	MGP_WTSI_7_133591768	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217950803					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068764	MGP_WTSI_7_133591768	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047426 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	614 bp upstream
Tssr69023	transcription start site region 69023	340 bp downstream
Tssr74664	transcription start site region 74664	1666 bp upstream
Tssr74665	transcription start site region 74665	1340 bp upstream
Tssr74666	transcription start site region 74666	1281 bp upstream
Tssr74667	transcription start site region 74667	1253 bp upstream
Tssr74668	transcription start site region 74668	1050 bp upstream
Tssr74669	transcription start site region 74669	1036 bp upstream
Tssr74670	transcription start site region 74670	780 bp upstream
Tssr74671	transcription start site region 74671	759 bp upstream
Tssr74672	transcription start site region 74672	742 bp upstream
Tssr74673	transcription start site region 74673	603 bp upstream
Tssr74674	transcription start site region 74674	575 bp upstream
Tssr74675	transcription start site region 74675	561 bp upstream
Tssr74676	transcription start site region 74676	352 bp upstream
Tssr74677	transcription start site region 74677	309 bp upstream
Tssr74678	transcription start site region 74678	288 bp upstream
Tssr74679	transcription start site region 74679	268 bp upstream
Tssr74680	transcription start site region 74680	250 bp upstream
Tssr74681	transcription start site region 74681	224 bp upstream
Tssr74682	transcription start site region 74682	213 bp upstream
Tssr74683	transcription start site region 74683	10 bp upstream
Tssr74684	transcription start site region 74684	82 bp downstream
Tssr74685	transcription start site region 74685	108 bp downstream
Tssr74686	transcription start site region 74686	340 bp downstream
Tssr74687	transcription start site region 74687	394 bp downstream
Tssr74688	transcription start site region 74688	498 bp downstream
Tssr74689	transcription start site region 74689	567 bp downstream
Tssr74690	transcription start site region 74690	988 bp downstream
Tssr74691	transcription start site region 74691	1031 bp downstream
Tssr74692	transcription start site region 74692	1898 bp downstream
Tssr74693	transcription start site region 74693	1924 bp downstream