rs217959000 SNP Detail

Summary

• ID
  rs217959000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52154179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAAGAATT AAAAAAAACT GTGTATTTCC
  AATGCGTTCA ACCATATTCC AGGTAAACAA AAAGGGTGTA TATCCAATGA AGTGACATTC
  TGGGGCTGTA TGGTGCCAGT TTCAAGACTT ACAACTGGCC AGGGAGGGTG AGAAGGCAGT
  R
  GCAGGCATTC TTAGAAATTC CAGTAGATAG ACATTTTGAT TATAGCAATA TTACTAACAA
  GAAGGTATAG CTAAATTAGA ACATGCCAGA TGAGAAGCAA GGGGAAGTCT GTAAACATTT
  TACCATAAGT TTATTTGTTG GCTATTTAGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319719441	CHEV_1_52171864	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217959000					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52154179 () rs orientation: forward

Symbol	Name	Function Class
Gm28177	predicted gene 28177	within coordinates
Gm31812	predicted gene, 31812	1121 bp upstream
Rr366897	regulatory region 366897	422 bp downstream
Rr410805	regulatory region 410805	1280 bp distal
Rr410806	regulatory region 410806	662 bp distal