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rs217959583 SNP Detail
Summary
  • ID
    rs217959583
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:87053435 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCTTAGCCA CATCTGAAAT
GACTGATGGG GATCCAGGGC AAGGGAGGCA GAGAGGCTCG GGTGAAGAAA TAAATGTCTG
CTTTGAGCCC AGTTGGGGGT GTCTCTGTCC CCAGACATAC AGTGTGGACA GACAGGTTCC
AGACAGTGCA AGCACGGCCA CCGCCTACCT GTGTGGGGTC AAGACCAACT ACAAGACCAT
Y
GGCGTGAGCG CAGCCGCGAG ATTCGACCAG TGCAACACCA CATTTGGCAA TGAGGTCTTC
TCAGTGATGT ACCGTGCCAA GAAAGCAGGT GAGTTGGAGC CAGGCTCAGC TATGGGGGGC
AAGCCTAGGG GACTGGATGT CTCACCCTGA CCTTTGCCGT CTTCAGGAAA ATCCGTAGGT
GTGGTGACCA CCACCAGAGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss350380292 MGP_WTSI_1_89022288 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217959583 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss350380292 MGP_WTSI_1_89022288 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:87053435 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Akp3 alkaline phosphatase 3, intestine, not Mn requiring within coordinates
Cpgi518 CpG island 518 1397 bp proximal
Rr17963 regulatory region 17963 1166 bp proximal
Tssr145 transcription start site region 145 631 bp upstream
Tssr146 transcription start site region 146 1875 bp upstream
Tssr7781 transcription start site region 7781 753 bp downstream
Tssr7782 transcription start site region 7782 310 bp downstream
Tssr7783 transcription start site region 7783 17 bp downstream
Tssr7784 transcription start site region 7784 218 bp upstream
Tssr7785 transcription start site region 7785 254 bp upstream
Tssr7786 transcription start site region 7786 284 bp upstream
Tssr7787 transcription start site region 7787 610 bp upstream
Tssr7788 transcription start site region 7788 1012 bp upstream
Tssr7789 transcription start site region 7789 1042 bp upstream
Tssr7790 transcription start site region 7790 1096 bp upstream
Tssr7791 transcription start site region 7791 1220 bp upstream
Tssr7792 transcription start site region 7792 1248 bp upstream
Tssr7793 transcription start site region 7793 1261 bp upstream
Tssr7794 transcription start site region 7794 1278 bp upstream
Tssr7795 transcription start site region 7795 1304 bp upstream
Tssr7796 transcription start site region 7796 1327 bp upstream
Tssr7797 transcription start site region 7797 1344 bp upstream
Tssr7798 transcription start site region 7798 1381 bp upstream
Tssr7799 transcription start site region 7799 1617 bp upstream
Tssr7800 transcription start site region 7800 1636 bp upstream
Tssr7801 transcription start site region 7801 1695 bp upstream
Tssr7802 transcription start site region 7802 1822 bp upstream
Tssr7803 transcription start site region 7803 1883 bp upstream
Tssr7804 transcription start site region 7804 1907 bp upstream
Tssr7805 transcription start site region 7805 1981 bp upstream
Tssr7806 transcription start site region 7806 1995 bp upstream
Tssr12838 transcription start site region 12838 5 bp downstream
Tssr12839 transcription start site region 12839 20 bp downstream
Tssr12840 transcription start site region 12840 33 bp downstream
Tssr12841 transcription start site region 12841 1085 bp downstream
Tssr12842 transcription start site region 12842 1411 bp downstream
Tssr12843 transcription start site region 12843 1673 bp downstream
Tssr12844 transcription start site region 12844 1864 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory