rs217959834 SNP Detail

Summary

• ID
  rs217959834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115152768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGGAGA GCCGTGAAGT
  AGAAAGGAGC ATCCGACATT GACGTGTGAC AAGAAGTCAG ACAAGAAATC AGAGACATTA
  CCTTTAAGTT CAAGGCCAGC CTCTTTTGAA TTGTGAGCTC TAAGCTAATT GGAGCTACAT
  AGCAAGACAC CATTTCAGTA ATAATAATAA TGATAATATT TACAATAATA ATGCAAATAG
  R
  AAAAGAATTT GTGATGTAAC TTGCAAGGTA TCAATTCAAA AACAGTCTTT AACCTGGTAC
  AGAATGTTAT CGGGTCCTTT TACAAAATTA TAATTAGAAA ATTGGACAAG GCTAAAATTA
  CGTATGTCTC TCTAGAATCA ATCATTTATA AGATTATCTT GTCAATTATT TTTATAAATG
  AGATTATATT ATCTACTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484112	CHEV_10_114753919	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217959834					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115152768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	750 bp distal
Gm10752	predicted gene 10752	within coordinates
Gm67120	predicted gene, 67120	within coordinates
Rab21	RAB21, member RAS oncogene family	1228 bp upstream
Rr402237	regulatory region 402237	1098 bp downstream
Rr402238	regulatory region 402238	402 bp downstream
Rr439193	regulatory region 439193	1274 bp distal
Rr439194	regulatory region 439194	1224 bp distal
Rr439195	regulatory region 439195	163 bp distal
Rr439196	regulatory region 439196	1036 bp distal
Rr439197	regulatory region 439197	667 bp proximal
Rr439198	regulatory region 439198	808 bp proximal
Tssr95806	transcription start site region 95806	1809 bp downstream
Tssr95807	transcription start site region 95807	1769 bp downstream
Tssr95808	transcription start site region 95808	1193 bp downstream
Tssr95809	transcription start site region 95809	1169 bp downstream
Tssr99318	transcription start site region 99318	1976 bp upstream
Tssr99319	transcription start site region 99319	1933 bp upstream
Tssr99320	transcription start site region 99320	1341 bp upstream
Tssr99321	transcription start site region 99321	1248 bp upstream
Tssr99322	transcription start site region 99322	1239 bp upstream