rs217961141 SNP Detail

Summary

• ID
  rs217961141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:36764576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAAGT TGTTTCACAA
  TAATTTCTTA GGTTATTCAT TAGAAGTATT CTTTTTCAAT AAAATGAAGA GGAAGCCTGG
  GACTAGAGAA AAGACTCATT GGTTAAGGGT TCTGTAAGTT TGGCCAGCAG ATATTGAGTA
  CTGTGTGCTA TAGAGAAATA GCATGAGGTG ACTGCTGCAG CCTACTAGCT GTGAGTTGAC
  Y
  TAAGGATATC TGTAAATCCC AGCACACTGG GATACGGAGA AAGCATACTT TCTTAGCAGA
  GAATATTAAT TTCTGCCAAG TGAGCTGCAT GCCTGAGGAA GTAGCCTCCA TGATAATTTT
  CTCATGAGAC ACTTTGTTTT AGTTAATCTA GGAAACCTGT AATAGCTTTG GACTGCTGAC
  CGATTTCTCA GTCTGCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	DBA/2J	LEWES/EiJ	LG/J	MOLF/EiJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss398112620	MGP_WTSI_17_36590629	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	DBA/2J	LEWES/EiJ	LG/J	MOLF/EiJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs217961141					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398112620	MGP_WTSI_17_36590629	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:36764576 () rs orientation: forward

Symbol	Name	Function Class
Gm65846	predicted gene, 65846	within coordinates
Obox3-ps8	oocyte specific homeobox 3, pseudogene 8	431 bp upstream