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rs217962129 SNP Detail
Summary
  • ID
    rs217962129
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr10:51360095 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGTGTCATTC CTCCTGCTTT
    TCTTCCTCCT GCTTTTTCTC ATCCTCATCG GATACCAGTG TCGTCACAAA AATAAGGCTA
    GTAAGTAGAG CATGAGTGCC TTGCATGTCT GGAGGTGTTG GGCAGAGAAA ACATGTAGTC
    TCAAGACATG TATAAAATTC AGAGATATTG CAATATTTCC CATCTCCTAG AGTATTAGTA
    W
    AGTCATAGGA AGGAATTTAA CAGTCCCTTT CTTCCACTTA AAATTTCTAT TGTTGGAGCT
    TTCCCATCCT CCTAGCAGAT GCTTTTTCAA TTCATGCAGC TCAAAGAGAG GCCAACTTAC
    AAGTGCTTTC AACAGCACCA GACCCAACAC ACAGAGATAG ACACCACCAG AAGAGATAAT
    TCTTGTCAAT AGACACAGCA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss380379648 MGP_WTSI_10_51203805 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T A A T T T T T T T T T T T T T T A T T T T T T T T T T A T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217962129 SNP T T T T T T T T T T T T T T T T T T T T A A T T T T T T T T T T T T T T A T T T T T T T T T T A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss380379648 MGP_WTSI_10_51203805 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:51360095 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm40645 predicted gene, 40645 within coordinates
Gm49339 predicted gene, 49339 within coordinates
Lilrb4b leukocyte immunoglobulin-like receptor, subfamily B, member 4B within coordinates
Rr227838 regulatory region 227838 1895 bp distal
Tssr93243 transcription start site region 93243 1386 bp downstream
Tssr93244 transcription start site region 93244 1115 bp downstream
Tssr93245 transcription start site region 93245 579 bp downstream
Tssr93246 transcription start site region 93246 394 bp downstream
Tssr93247 transcription start site region 93247 351 bp downstream
Tssr93248 transcription start site region 93248 310 bp downstream
Tssr93249 transcription start site region 93249 144 bp downstream
Tssr93250 transcription start site region 93250 310 bp upstream
Tssr93251 transcription start site region 93251 349 bp upstream
Tssr93252 transcription start site region 93252 452 bp upstream
Tssr93253 transcription start site region 93253 647 bp upstream
Tssr93254 transcription start site region 93254 774 bp upstream
Tssr93255 transcription start site region 93255 1001 bp upstream
Tssr93256 transcription start site region 93256 1113 bp upstream
Tssr93257 transcription start site region 93257 1476 bp upstream
Tssr93258 transcription start site region 93258 1711 bp upstream
Tssr93259 transcription start site region 93259 1753 bp upstream
Tssr97554 transcription start site region 97554 1750 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory