rs217963321 SNP Detail

Summary

• ID
  rs217963321
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100141178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGAGCCATC TCACCAGCCC CTTCACCAAT TTTTTAAAAG
  AGTGGTTTAT TGGGTGCATT GCGAGTGAGC AATGGGCAGA GTAGAGTACT GTCAGCTTTG
  W
  AAGATCACCA CCAGCTATGT TGGGATCACT ATCCACCCAC CAGCTATGGG GTTTTGCCAC
  TTGATAGTGA AGGTTTATTT TATCTAGTCT TGTTTAAAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372520041	MGP_WTSI_7_107640480	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	A	A	T	T	T	T	T	T	T	A	A	T	A	A	A	T	A	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217963321					SNP	T	T	T	T	T	T	T	T	T	T	A	A	T	T	T	T	T	T	T	A	A	T	A	A	A	T	A	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372520041	MGP_WTSI_7_107640480	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100141178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	747 bp proximal
Gm72028	predicted gene, 72028	within coordinates
Rr400469	regulatory region 400469	1178 bp upstream
Rr652131	regulatory region 652131	321 bp proximal
Rr652132	regulatory region 652132	448 bp proximal
Rr652133	regulatory region 652133	1049 bp proximal
Tssr68123	transcription start site region 68123	1348 bp upstream
Tssr68124	transcription start site region 68124	1378 bp upstream
Tssr68125	transcription start site region 68125	1799 bp upstream
Tssr68126	transcription start site region 68126	1858 bp upstream
Tssr68127	transcription start site region 68127	1968 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	1387 bp upstream