rs217963936 SNP Detail

Summary

• ID
  rs217963936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96681786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CTTTGCTTCT TAAGATCTGG
  R
  CAGTGAAAGA TCATTTCTGG TTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323822812	CHEV_11_96652274	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217963936					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96681786 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			Intron
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			1149 bp distal
Rr455508	regulatory region 455508			1701 bp distal
Rr455509	regulatory region 455509			517 bp distal
Rr455510	regulatory region 455510			within coordinates
Rr455511	regulatory region 455511			552 bp proximal
Tssr104569	transcription start site region 104569			1814 bp downstream
Tssr104570	transcription start site region 104570			1754 bp downstream
Tssr104571	transcription start site region 104571			1736 bp downstream
Tssr104572	transcription start site region 104572			1706 bp downstream
Tssr110346	transcription start site region 110346			1952 bp upstream