rs217974560 SNP Detail

Summary

• ID
  rs217974560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74544248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGACGC TGAGAGTAAG
  AGGAAACATT CCCTTTGGAA AAACAAGCTC CTTGACTGCG TCCATAGGCC CTGCAGCTAG
  CTAGGTTCAT TGAAGTTGGG TGGGGCTCAA AGACTTGATG GCCTGAGTCT GGGTGGGGCT
  GGGGGTGGAC TTGGAGTTCT GAGGCTGGGT GGGGCTGGGG TGGGCTGGAT GCTCGGCTGG
  Y
  CAAGTTGTAG GTTTGGGGTT TCAGCTGCTT TTTCCTGGGT TTGGTGGCCC AGCGTGTTTC
  GGTGAAGAAC GTGGTTCTGA TTACACAGAG GAAGGTGGTG CCAGGTGCAA ACATGGAGGA
  TGTAGGGTAT CATTGTGAGC CTCGTGGTGA TATTCAAAGC TTATTGGAAA GAAACGGTTG
  GTTGCCACTT GAGAAATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485126	MGP_WTSI_2_74551961	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217974560					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485126	MGP_WTSI_2_74551961	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74544248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11801	CpG island 11801	1313 bp distal
Cpgi11802	CpG island 11802	1088 bp proximal
Cpgi11803	CpG island 11803	1942 bp proximal
Gm38462	predicted gene, 38462	1846 bp upstream
Hoxd3	homeobox D3	within coordinates
Hoxd3os1	homeobox D3, opposite strand 1	within coordinates
Igs15	intergenic site 15	within coordinates
Rr44608	regulatory region 44608	1753 bp proximal
Rr559372	regulatory region 559372	1967 bp distal
Rr559373	regulatory region 559373	1843 bp distal
Rr559374	regulatory region 559374	1335 bp distal
Tssr18433	transcription start site region 18433	1996 bp downstream
Tssr18434	transcription start site region 18434	1965 bp downstream
Tssr18435	transcription start site region 18435	1904 bp downstream
Tssr18436	transcription start site region 18436	1747 bp downstream
Tssr24624	transcription start site region 24624	359 bp downstream