rs217977232 SNP Detail

Summary

• ID
  rs217977232
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28452083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTCCTG TCCTGCCTGC
  ATCAGTCCAG GGCACATGCA GGAGCAGCTC CGCTTACTTG GCAGTGGTGA TAGTATGGCC
  TCCTGCTTCT CCTCTGTGCA AGGTTTCAGG TAGGGGGAAG TAGGTGGCCT GTAGCTGCAA
  GCCCAAGCTG GCATCCCAGA AGCCCTCTAA GTCCAGGCTG ATTGACTCCC TACTATACTG
  K
  GTAAGGAAAC TGAAGAGAAG AGCCAGAGAG ACAACACAGA TCATTGGGGT ATCTAAGGTT
  CTTGGTTACT GGGAGGAGTC AGAAAGCCAG CTTAGGGATG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGAGTGTGAT GCCACCTCTC AGAAGTGTGT
  CTGTGCGATA GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353478991	MGP_WTSI_2_28417591	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217977232					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353478991	MGP_WTSI_2_28417591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28452083 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Gm13381	predicted gene 13381	126 bp upstream
Rr553836	regulatory region 553836	1284 bp distal
Tssr16963	transcription start site region 16963	1472 bp downstream
Tssr16964	transcription start site region 16964	1108 bp downstream
Tssr16965	transcription start site region 16965	438 bp upstream
Tssr23268	transcription start site region 23268	1496 bp upstream
Tssr23269	transcription start site region 23269	1464 bp upstream
Tssr23270	transcription start site region 23270	1392 bp upstream
Tssr23271	transcription start site region 23271	879 bp upstream
Tssr23272	transcription start site region 23272	844 bp upstream
Tssr23273	transcription start site region 23273	828 bp upstream
Tssr23274	transcription start site region 23274	794 bp upstream
Tssr23275	transcription start site region 23275	731 bp upstream
Tssr23276	transcription start site region 23276	340 bp downstream
Tssr23277	transcription start site region 23277	362 bp downstream
Tssr23278	transcription start site region 23278	1302 bp downstream