rs217978052 SNP Detail

Summary

• ID
  rs217978052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:104079556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCATGCC AGGATGCTGT
  ACTGACTTCT AAAACCACCT GGAGTCAACA GCGTGGATGT ACATGTCCTG CCTTGTCCTC
  TGAGCCGATT TCTTCTCTGA GCCTATTTCT TCTGATAGCT GTGCAAACCA CCATATTGCT
  TACTACTGAC AATTTTACTG ACTTTATTAC GGAGTTCTCC ACTGTCCTGA CCGTGTCTTA
  K
  GCATTACCAT GAAATATCAG AGATAATGTC GCAAAGCTTA CATCTGGGAA TCTGAGGTAC
  TAGAGCCTGC TTTCTACCTT GAACTCATGG AGGGCCCTTG AACATCTTAT TATACGTGTA
  AAATGGCAAT AACTGCCAAT GTGTGGGTTG CCACAATGGA TAAAGGAAGT CATGCATCTA
  ACCTGACACT TGGACCAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392314113	MGP_WTSI_14_104241337	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217978052					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392314113	MGP_WTSI_14_104241337	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:104079556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6819	CpG island 6819	885 bp proximal
Ednrb	endothelin receptor type B	within coordinates
Gm35197	predicted gene, 35197	within coordinates
Rr407	regulatory region 407	1973 bp proximal
Rr390089	regulatory region 390089	1891 bp upstream
Rr497067	regulatory region 497067	1544 bp proximal
Rr497068	regulatory region 497068	1565 bp proximal
Tssr130119	transcription start site region 130119	938 bp downstream
Tssr130120	transcription start site region 130120	1018 bp downstream
Tssr130121	transcription start site region 130121	1353 bp downstream
Tssr130122	transcription start site region 130122	1420 bp downstream
Tssr130123	transcription start site region 130123	1474 bp downstream
Tssr130124	transcription start site region 130124	1506 bp downstream
Tssr130125	transcription start site region 130125	1565 bp downstream
Tssr130126	transcription start site region 130126	1590 bp downstream
Tssr130127	transcription start site region 130127	1701 bp downstream