rs217984134 SNP Detail

Summary

• ID
  rs217984134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156079735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCCC CCCCCCCCCC
  GGTAGTGCTG GGATCAGCCC TAGGACTTGA GCACACCAGA CAAGTGTTTC ACCCCTGCCT
  GAGCTATATA TATATAATAT ATATATATAT ATATCCCTAG CCCCTTGTGT GTGGATCTTG
  TTTGGAGATA GGATCTTACT GTTTATCCAT GGCTGGCTTG GAGCTCACAG TGTGGACCAG
  R
  CTGGCCTTGA ACTCAGAGAT CCACCCATGT CCACCTCCTG TGTGCTGGGA TTAAAGTTGA
  ATGTCACCAT ATCCTGCTGG AATATATGGT TGGTCCTGAT TATTAAATCA TGTTATGAAA
  TAAATATATT TAGTGAAGCA TTTGCTTCCA CTTAACTGTG GTGGTCTGTC TTTTTTTTTT
  TTTTTTTTTT TTTTCTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444409	CHEV_4_155369387	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217984134					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156079735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1441 bp distal
Rr100725	regulatory region 100725	734 bp distal
Rr377473	regulatory region 377473	905 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40750	transcription start site region 40750	1982 bp downstream
Tssr40751	transcription start site region 40751	1962 bp downstream
Tssr40752	transcription start site region 40752	1823 bp downstream
Tssr40753	transcription start site region 40753	1061 bp upstream