rs217986088 SNP Detail

Summary

• ID
  rs217986088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69691405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTAGGGT GGCTGGAGGC
  AGAAGCATAG TTTGGGATCA GCTTGGGTTA CTCATTGAGT CAGACTCCAA CATCAAAACA
  AGCAAAGATA GACAGCAGCA GCAAGAGGGG GAGCAGTAAG AGCCTGGTGA TGTAGGTGAA
  GTCCCAGCAC TTTGTACTGA AGCAGGAGTT CGAATCATTG GCCAGTTTGT GCTTCAGAGA
  R
  CTAGCCTGTC GGAAACCAAG CAACTGTATG GTTTTTTAAT TTTTTTCCAA AACCACAACA
  CCATGCAAGT CAAATACATT GCAAAAGGCC AAGCGTGCTG GCGCACCCCT TTAATAATGC
  CAGCACTCCC GGAAGAGGTA GGCGAGTGTC TCAGCAGAGG CAGGAGGAGT TTGAGGGTCA
  GCCTGGTCTA CAGAGCAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354379905	MGP_WTSI_2_69699118	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217986088					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354379905	MGP_WTSI_2_69699118	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69691405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11719	CpG island 11719	166 bp proximal
Rr397021	regulatory region 397021	404 bp downstream
Rr397022	regulatory region 397022	301 bp upstream
Rr558483	regulatory region 558483	11 bp proximal
Rr558484	regulatory region 558484	512 bp proximal
Ssb	small RNA binding exonuclease protection factor La	558 bp upstream
Tssr18173	transcription start site region 18173	516 bp upstream
Tssr18174	transcription start site region 18174	524 bp upstream
Tssr18175	transcription start site region 18175	577 bp upstream
Tssr18176	transcription start site region 18176	1114 bp upstream