rs217986746 SNP Detail

Summary

• ID
  rs217986746
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127126800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCTGCCC CCCCCCCAGG
  AGGGGCCGGA CAGCATAAAG GATACTCGCT CTCCGCTCTT GAGGTCAGTT ATCTTGAGCC
  TAACACGTCG ATTATATCAT GTTGAAGATG AGCGGGTGGC AGCGACAGAG CCAGAATAAC
  AGCCGGAACC TGAGGAGAGA GGCGAGTACT GGCTCCGTCT AACCCTTACC TTCCCATCCT
  S
  GCCAGCATAG CTATTTTATA AAGTTGGAGA CAACTGTTCT GGAGGATGTA GCCCCACCCC
  TTCCACTGTA AGCTTGTAGA CTGGGAAGGG TGAAGGCCGG GAATCCCTGA TTCAGGAATG
  GTGCTTACAG GCCCTCTCTT GCATTGGGCG ATTGCATTCC CGTTCCCTTG TCTCGAGTTG
  GTCCCCACTC TGCAGAGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182460	MGP_WTSI_10_126727987	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217986746					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182460	MGP_WTSI_10_126727987	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127126800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	1348 bp distal
Cpgi2350	CpG island 2350	within coordinates
Ddit3	DNA-damage inducible transcript 3	within coordinates
Gm4189	predicted gene 4189	within coordinates
Gm20492	predicted gene 20492	1092 bp downstream
Gm66222	predicted gene, 66222	418 bp downstream
Mbd6	methyl-CpG binding domain protein 6	1913 bp upstream
Rr369092	regulatory region 369092	162 bp downstream
Rr402323	regulatory region 402323	1544 bp downstream
Rr402324	regulatory region 402324	401 bp upstream
Rr440865	regulatory region 440865	1765 bp distal
Rr440866	regulatory region 440866	912 bp distal
Rr440867	regulatory region 440867	92 bp distal
Rr440868	regulatory region 440868	291 bp distal
Rr440869	regulatory region 440869	407 bp proximal
Tssr3392	transcription start site region 3392	1980 bp downstream
Tssr96179	transcription start site region 96179	917 bp downstream
Tssr96180	transcription start site region 96180	128 bp downstream
Tssr99761	transcription start site region 99761	1934 bp upstream
Tssr99762	transcription start site region 99762	1896 bp upstream
Tssr99763	transcription start site region 99763	1864 bp upstream
Tssr99764	transcription start site region 99764	571 bp upstream