rs217988809 SNP Detail

Summary

• ID
  rs217988809
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40586002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCGCGG GTCACCCTGG
  CCCTTGGGGA CCTGGGCTGC GCTCCCAGAG CGTCCACCTG CCAGGACTGA GCGATCGCTC
  CCGCGGGCGA TCCCAGGGCA TACGGACCCA CGGTGACACT CGGACATTTG TGTCCTCCAT
  CAGAACCTCA GCCGAGCTGG GGACCCGCTG ACACCCACCG CCGACCCGAG GCTCGCCCTC
  S
  AGGCGGCTCC CTACAGGAAT GTTTCAGGGG GGCGGAAGGA CCAGCATCCC CAAGCCTGCG
  CCCCGCAACC TGGAGGACCT GGACTCGGTG CAGCGCGTCC TGCTACACAG GTCAGTGTGG
  CTCCGGGGAT GCAACCAGGC TGGGCGCAGC GGCGGGGTTC GGCTAGGTGC AGGGCTCCTA
  TCCCAGAGTG GGTTCTGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357665496	MGP_WTSI_3_40430775	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217988809					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357665496	MGP_WTSI_3_40430775	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40586002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13107	CpG island 13107	within coordinates
Intu	inturned planar cell polarity protein	within coordinates
Rr77556	regulatory region 77556	within coordinates
Tssr28946	transcription start site region 28946	824 bp downstream
Tssr28947	transcription start site region 28947	697 bp downstream
Tssr28948	transcription start site region 28948	421 bp downstream
Tssr28949	transcription start site region 28949	383 bp downstream
Tssr28950	transcription start site region 28950	291 bp downstream
Tssr28951	transcription start site region 28951	254 bp downstream
Tssr28952	transcription start site region 28952	227 bp downstream
Tssr28953	transcription start site region 28953	200 bp downstream
Tssr28954	transcription start site region 28954	148 bp downstream