rs217990623 SNP Detail

Summary

• ID
  rs217990623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75116852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAACTAG AAATCAAATT
  CTGCTAAGAC AGGAGGGAAG GCATGATGAA ACACACCTGT AATCCCAAAA CTCAAGACAT
  AAGGCAGGGG GATTACTACA AGGTGGAGGC CATCCAGACC TCTACAGTGA GTTCCAGGCT
  TCTGGGATCT ACACAGTAAG ACACTGTCTC AACCCTTCAG GCCTCGATTT CCCCACTATA
  Y
  CTCACCCCCA AATTCTAAGT GGATGAAAGC CCACTCTAAG GTTGGTCCTC AACTTTTTCT
  AGCAGAAAGG CTTCTTTTTC TTTTTAAAGA TTTATTTATT TTATTTATAT GAGCACACTG
  TAGCTGTCTT CAGACACACC ACAGGAGGGC ATCCGATCCC ACTACATGTG GTTGCTGAGA
  CTTGAACTCA GGACCTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350135747	MGP_WTSI_1_75136782	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217990623					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350135747	MGP_WTSI_1_75136782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75116852 () rs orientation: forward

Symbol	Name	Function Class
Cnppd1	cyclin Pas1/PHO80 domain containing 1	within coordinates
Cpgi410	CpG island 410	1099 bp proximal
Gm57175	predicted gene, 57175	1397 bp upstream
Rr29645	regulatory region 29645	1251 bp distal
Rr29646	regulatory region 29646	within coordinates
Tssr7484	transcription start site region 7484	1425 bp upstream
Tssr7485	transcription start site region 7485	1579 bp upstream
Tssr12349	transcription start site region 12349	808 bp upstream
Tssr12350	transcription start site region 12350	1301 bp downstream
Tssr12351	transcription start site region 12351	1310 bp downstream
Tssr12352	transcription start site region 12352	1323 bp downstream
Tssr12353	transcription start site region 12353	1364 bp downstream
Tssr12354	transcription start site region 12354	1418 bp downstream
Tssr12355	transcription start site region 12355	1521 bp downstream
Tssr12356	transcription start site region 12356	1584 bp downstream