rs218011204 SNP Detail

Summary

• ID
  rs218011204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48651521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTCCTTT ACTGATATCA
  GAATCAGCAT TTTCAAGTTT TCACTGAGGG CTATAGGGCT CTTACGCACC AGCTGTAGTC
  TCAGGACTCG CACTATATTG GAGGATAGCT CATTTATTGA CTTAACAGGG CTAGCTTATA
  TAGCTCAGTG AGGGAGGGGA GGACAAAAGA ACAAGGGAGG AGCCGGGCAT GGTGGCGCAC
  R
  CCTTTAATCA AAGCACTCGG GAGGCAGAGG CAGGCGGATT TCTGAGTTTG AGGCCAGCCT
  GGTCTACAAA GTGTTCCAGG ACAGCCAGGG CTATACAGAG AAACCCTGTC TCAAAAAACC
  AAAAAAAAAA AAAAAAAAAA AAAAAAAAAG AACAAGGGAG GAAACACCTA ATTTGCATAT
  GCAGACTTGA CTGAAGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368226749	MGP_WTSI_6_48624586	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218011204					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368226749	MGP_WTSI_6_48624586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48651521 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	1563 bp upstream
Gm46958	predicted gene, 46958	1245 bp downstream
Rr629719	regulatory region 629719	127 bp proximal
Rr629720	regulatory region 629720	1061 bp proximal
Tssr56160	transcription start site region 56160	212 bp upstream
Tssr56161	transcription start site region 56161	614 bp upstream
Tssr56162	transcription start site region 56162	1527 bp upstream
Tssr56163	transcription start site region 56163	1573 bp upstream
Tssr56164	transcription start site region 56164	1606 bp upstream
Tssr56165	transcription start site region 56165	1821 bp upstream