rs218021038 SNP Detail

Summary

• ID
  rs218021038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127124026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGCTAG GAGTGTGGGC
  AAATTCCCAT AATGCCAGGC CACTAGGAAG TTTCCCAGTG TCTGGCCACT GCTGTGCCCT
  CCCCCAGGAA GATCATATAA AAAGTACAGA TTGCCCCACA GGTCACCAAG CAATTGCCCA
  ACTGCCTGGC AGGGTAGTGC CAGCTGAAAT CCCCCCATGC CCACTCCATC CAACAATCTC
  R
  GATCTAATTC ATTTGGACCT CCAAAGAGGC TGGAGCCAGA GCTCTGTCTT CCTCCAGGAT
  CCTGAGAACT CCTGGTCCTC TCAAGCCGAC GAAAAGGGGA TTCATAATCC CCCACTGGCT
  TCCAATTAAC AACAAGAAGC ATTCCCTGAC ATGTAGGGAC GGCCCTTAGA CCTGCAAGTA
  CCCCTCACCA ACCTCACCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182443	MGP_WTSI_10_126725213	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218021038					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182443	MGP_WTSI_10_126725213	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127124026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	140 bp proximal
Gm4189	predicted gene 4189	1536 bp downstream
Gm20492	predicted gene 20492	328 bp upstream
Gm66222	predicted gene, 66222	1852 bp upstream
Mbd6	methyl-CpG binding domain protein 6	within coordinates
Rr402323	regulatory region 402323	930 bp upstream
Rr440861	regulatory region 440861	1781 bp distal
Rr440862	regulatory region 440862	1576 bp distal
Rr440863	regulatory region 440863	within coordinates
Rr440864	regulatory region 440864	339 bp proximal
Rr440865	regulatory region 440865	723 bp proximal
Rr440866	regulatory region 440866	1362 bp proximal
Tssr3392	transcription start site region 3392	753 bp upstream
Tssr96176	transcription start site region 96176	72 bp downstream
Tssr96177	transcription start site region 96177	333 bp upstream
Tssr96178	transcription start site region 96178	371 bp upstream
Tssr96179	transcription start site region 96179	1846 bp upstream
Tssr99753	transcription start site region 99753	1894 bp upstream
Tssr99754	transcription start site region 99754	1726 bp upstream
Tssr99755	transcription start site region 99755	258 bp downstream
Tssr99756	transcription start site region 99756	276 bp downstream
Tssr99757	transcription start site region 99757	453 bp downstream
Tssr99758	transcription start site region 99758	602 bp downstream
Tssr99759	transcription start site region 99759	662 bp downstream
Tssr99760	transcription start site region 99760	694 bp downstream
Tssr99761	transcription start site region 99761	808 bp downstream
Tssr99762	transcription start site region 99762	842 bp downstream
Tssr99763	transcription start site region 99763	899 bp downstream