rs218025250 SNP Detail

Summary

• ID
  rs218025250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135658577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGTCTCT TTTTGTATGT
  ATATCTCTGT CTCTCTCTCT TTCTCTTTCT CTCTCCTAGT GAAGCTATTC TCTCCCTCTA
  AGGCTCCCCC TCCCACCTCT AAGACTCAAT CACCCCTCTG CATCCTTCTC ATGCTAATTG
  CCCCTATTGA AAGGAATTGT GTCTGTGTCC CTTCCACAGC TTTTCTTCAA TTCCACTTCA
  Y
  CCCTTCCCTG TGGGCTATGA CCTCACTCCG TGAGAGGAAA CAAACCCCTT CCTTCCTTCC
  TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT CCTCCCTCCC TCCCTTCCTT CCTTCCTTAA
  GGTGTTACTG TCATAGCATC AAGAAAAGTA AGGAACAGCC TGGTGGTGGT GGTGGTGGTG
  GCACACACCT TTAATCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321697447	CHEV_5_136105593	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218025250					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135658577 () rs orientation: forward

Symbol	Name	Function Class
Rr399417	regulatory region 399417	775 bp downstream
Rr622386	regulatory region 622386	943 bp distal
Rr622387	regulatory region 622387	337 bp distal
Rr622388	regulatory region 622388	839 bp proximal
Rr622389	regulatory region 622389	1075 bp proximal