rs218035321 SNP Detail

Summary

• ID
  rs218035321
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4274411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGAGACA CTAGGGCACC
  AACTCGGCTA CAAAACCTTC TACCTACAAT TTATCCTGCC TACAAGATGT GCTGGGGTAA
  AGGTGGCACA GAAACTGTGG CCAACCAATG ACGGGTACAG CTTGGCTCAT GCCATAAGAG
  GGAGCCACAC TTGACATTAC CTAGAAGTCC AGGAACCAAA GTCTGGATAG CCCAGAGACC
  T
  AGGACAGAAC CAAACACAAA TGGCAAACAA ACAACCTCAA CAAAATGATT TCTAATGATA
  TTCTGCTATA CTCGTAGATT GGAGGCTAGC ATTGTCATCA GAGAACCTTC ATCTAGCAAC
  TCATAGGAGG AGATGCAGAG ACCCACAGCC AAATATTAGG TGGACTGGGT ATCCTATGGA
  AGAGGAGGAA CAAAGGATTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873746	CHEV_12_4224411	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218035321					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4274411 () rs orientation: forward

Symbol	Name	Function Class
Cenpo	centromere protein O	within coordinates
Gm17816	predicted gene, 17816	1374 bp upstream
Gm48210	predicted gene, 48210	1050 bp downstream
Tssr112550	transcription start site region 112550	1310 bp upstream