rs218036874 SNP Detail

Summary

• ID
  rs218036874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62720686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGACAA AGGGTGAGGA
  GGGTGTCTCC AACCTCTGAC CCACCCCTTC AGCGGAAGCA GGGAATCTGA GAGCAATAGT
  TAACTCATTA AAATGTTGAG TTCTACAGTC ATTTAGTCCA GCCTACTAAA GACCCTAAAT
  AAATCCTATT CCTCCAAATG TTTATTTTTA AAAAGACCCC AATTCAAAAT GCTTAATTGG
  R
  GATATGAAGA CCAGGGCAAT GCCCTATATG ATCAATGAAG ATCTGCACTC ACAGCCAAGA
  ACACCGGCTG AGCAAGGCAG GAGTATCACC GCGAGGACCA GAGGCAACAG CAGTGGAGGG
  TGCATATCTG TAATCCCAAT ATTCAGGAGG AGTCATAAGT TCGAGACCAG CTTCTGCCAG
  TAAAGGTCAA GTCAGTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323332070	CHEV_10_62347655	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218036874					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62720686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	1181 bp proximal
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Tet1	tet methylcytosine dioxygenase 1	within coordinates
Tssr93732	transcription start site region 93732	739 bp upstream