rs218038519 SNP Detail

Summary

• ID
  rs218038519
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118732468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGGGAGG GCGAACGAGC
  GAGAGCGAGC GAGCTAGGTA GGCGGACTAG CAAAAGGGAG AGGACCGGCC GCCCGTCAGC
  GCGCCCCGCC GAGCGCGCCG CGCCGCCGCC CCCGCCAGCC CCGGGAAGGG ACGGACGGAC
  GACAAGAAGC AGGTGCGGCT GCTTGCCCGC CCGCGCGCGC CGCCTCCCTC CCCCGGGTCC
  S
  GCGCTGCGGT CCCGCCATCG GGGAGCATTG CGCGCCTCGA GGTGACAGCC CCCGGGGGGC
  GCCCGCCTCG CAGGCCGGGG GCGGGGTGGG TGGCGGCCGC AGGGTGGCAG CTTGGCCGGG
  CGGCGGCGGC GCGGGCGTCC CGGGCTACGG AGGGCGGGAG GACGCGGGGT GCTTCCTCGC
  CGCGGCGGAG CCGGCTCGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355419645	MGP_WTSI_2_118727723	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218038519					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355419645	MGP_WTSI_2_118727723	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118732468 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	within coordinates
Gm32957	predicted gene, 32957	807 bp upstream
Gm75754	predicted gene, 75754	1188 bp upstream
Rr397220	regulatory region 397220	483 bp downstream
Rr563365	regulatory region 563365	1991 bp distal
Rr563366	regulatory region 563366	1490 bp distal
Rr563367	regulatory region 563367	524 bp distal
Rr563368	regulatory region 563368	942 bp distal
Rr563369	regulatory region 563369	674 bp distal
Rr563370	regulatory region 563370	within coordinates
Rr563371	regulatory region 563371	344 bp distal
Rr563372	regulatory region 563372	93 bp proximal
Rr563373	regulatory region 563373	545 bp proximal
Rr563374	regulatory region 563374	1038 bp proximal
Tssr19587	transcription start site region 19587	1590 bp downstream
Tssr19588	transcription start site region 19588	584 bp downstream
Tssr19589	transcription start site region 19589	499 bp downstream
Tssr19590	transcription start site region 19590	370 bp downstream
Tssr19591	transcription start site region 19591	324 bp downstream